Publications

Kang T, Sun Y, Kim JHyun, Ta C, Perotte A, Schiffer K, Wu M, Zhao Y, Moustafa-Fahmy N, Peng Y et al..  2023.  EvidenceMap: a three-level knowledge representation for medical evidence computation and comprehension.. J Am Med Inform Assoc.

Holste G, Jiang Z, Jaiswal A, Hanna M, Minkowitz S, Legasto AC, Escalon JG, Steinberger S, Bittman M, Shen TC et al..  2023.  How Does Pruning Impact Long-Tailed Multi-label Medical Image Classifiers? Med Image Comput Comput Assist Interv. 14224:663-673.

Liu H, Peng Y, Weng C.  2023.  How Good Is ChatGPT for Medication Evidence Synthesis? Stud Health Technol Inform. 302:1062-1066.

Armstrong M, Benda NC, Seier K, Rogers C, Ancker J, Stetson PD, Peng Y, Diamond L.  2023.  Improving Cancer Care Communication: Identifying Sociodemographic Differences in Patient Portal Secure Messages Not Authored by the Patient.. Appl Clin Inform.

Lin M, Li T, Yang Y, Holste G, Ding Y, Van Tassel SH, Kovacs K, Shih G, Wang Z, Lu Z et al..  2023.  Improving model fairness in image-based computer-aided diagnosis.. Nat Commun. 14(1):6261.

Tang L, Peng Y, Wang Y, Ding Y, Durrett G, Rousseau JF.  2023.  Less Likely Brainstorming: Using Language Models to Generate Alternative Hypotheses.. Proc Conf Assoc Comput Linguist Meet. 2023:12532-12555.

Wangyan T, Sun Q, Grizzard P, Liu J, Peng Y.  2023.  A new deep learning framework to process Matrix-assisted Laser Desorption/Ionisation Mass Spectrometry Imaging (MALDI-MSI) data of Tissue Microarrays (TMAs).. AMIA Jt Summits Transl Sci Proc. 2023:554-561.

Wang S, Dang Y, Sun Z, Ding Y, Pathak J, Tao C, Xiao Y, Peng Y.  2023.  An NLP approach to identify SDoH-related circumstance and suicide crisis from death investigation narratives.. J Am Med Inform Assoc.

Adekkanattu P, Rasmussen LV, Pacheco JA, Kabariti J, Stone DJ, Yu Y, Jiang G, Luo Y, Brandt PS, Xu Z et al..  2023.  Prediction of left ventricular ejection fraction changes in heart failure patients using machine learning and electronic health records: a multi-site study.. Sci Rep. 13(1):294.

Keloth VK, Banda JM, Gurley M, Heider PM, Kennedy G, Liu H, Liu F, Miller T, Natarajan K, Patterson OV et al..  2023.  Representing and Utilizing Clinical Textual Data for Real World Studies: An OHDSI Approach.. J Biomed Inform. :104343.

Sun Z, Lin M, Zhu Q, Xie Q, Wang F, Lu Z, Peng Y.  2023.  A scoping review on multimodal deep learning in biomedical images and texts.. J Biomed Inform. 146:104482.

Lin M, Hou B, Liu L, Gordon M, Kass M, Wang F, Van Tassel SH, Peng Y.  2022.  Automated diagnosing primary open-angle glaucoma from fundus image by simulating human's grading with deep learning.. Sci Rep. 12(1):14080.

Schmeelk S, Dogo MSamuel, Peng Y, Patra BGopal.  2022.  Classifying Cyber-Risky Clinical Notes by Employing Natural Language Processing.. Proc Annu Hawaii Int Conf Syst Sci. 2022:4140-4146.

Brandt PS, Pacheco JA, Adekkanattu P, Sholle ET, Abedian S, Stone DJ, Knaack DM, Xu J, Xu Z, Peng Y et al..  2022.  Design and validation of a FHIR-based EHR-driven phenotyping toolbox.. J Am Med Inform Assoc. 29(9):1449-1460.

Tang L, Kooragayalu S, Wang Y, Ding Y, Durrett G, Rousseau JF, Peng Y.  2022.  EchoGen: A New Benchmark Study on Generating Conclusions from Echocardiogram Notes.. Proc Conf Assoc Comput Linguist Meet. 2022:359-368.

Moukheiber D, Mahindre S, Moukheiber L, Moukheiber M, Wang S, Ma C, Shih G, Peng Y, Gao M.  2022.  Few-Shot Learning Geometric Ensemble for Multi-label Classification of Chest X-Rays.. Data Augment Label Imperfections (2022). 13567:112-122.

Wang S, Zhu Y, Lee S, Elton DC, Shen TC, Tang Y, Peng Y, Lu Z, Summers RM.  2022.  Global-Local attention network with multi-task uncertainty loss for abnormal lymph node detection in MR images.. Med Image Anal. 77:102345.

Benda NC, Rogers C, Sharma M, Narain W, Diamond LC, Ancker J, Seier K, Stetson PD, Sulieman L, Armstrong M et al..  2022.  Identifying Nonpatient Authors of Patient Portal Secure Messages in Oncology: A Proof-of-Concept Demonstration of Natural Language Processing Methods.. JCO Clin Cancer Inform. 6:e2200071.

Wang S, Lin M, Ghosal T, Ding Y, Peng Y.  2022.  Knowledge Graph Applications in Medical Imaging Analysis: A Scoping Review.. Health Data Sci. 2022

Han Y, Chen C, Tewfik A, Glicksberg B, Ding Y, Peng Y, Wang Z.  2022.  Knowledge-Augmented Contrastive Learning for Abnormality Classification and Localization in Chest X-rays with Radiomics using a Feedback Loop.. IEEE Winter Conf Appl Comput Vis. 2022:1789-1798.

Holste G, Wang S, Jiang Z, Shen TC, Shih G, Summers RM, Peng Y, Wang Z.  2022.  Long-Tailed Classification of Thorax Diseases on Chest X-Ray: A New Benchmark Study.. Data Augment Label Imperfections (2022). 13567:22-32.

Mathai TSudharshan, Lee S, Elton DC, Shen TC, Peng Y, Lu Z, Summers RM.  2022.  Lymph node detection in T2 MRI with transformers. SPIE Medical Imaging. :120333B.

Lin M, Liu L, Gorden M, Kass M, Van Tassel S, Wang F, Peng Y.  2022.  Multi-scale Multi-structure Siamese Network (MMSNet) for Primary Open-Angle Glaucoma Prediction.. Mach Learn Med Imaging. 13583:436-445.

Lee J, Wanyan T, Chen Q, Keenan TDL, Glicksberg BS, Chew EY, Lu Z, Wang F, Peng Y.  2022.  Predicting Age-related Macular Degeneration Progression with Longitudinal Fundus Images Using Deep Learning.. Mach Learn Med Imaging. 13583:11-20.

Wang S, Tang L, Lin M, Shih G, Ding Y, Peng Y.  2022.  Prior Knowledge Enhances Radiology Report Generation.. AMIA Annu Symp Proc. 2022:486-495.