Publications

Lu Z, Peng Y, Cohen T, Ghassemi M, Weng C, Tian S.  2024.  Large language models in biomedicine and health: current research landscape and future directions.. J Am Med Inform Assoc. 31(9):1801-1811.

Zhang G, Jin Q, McInerney DJered, Chen Y, Wang F, Cole CL, Yang Q, Wang Y, Malin BA, Peleg M et al..  2024.  Leveraging generative AI for clinical evidence synthesis needs to ensure trustworthiness.. J Biomed Inform. 153:104640.

Wang S, Zhou Y, Han Z, Tao C, Xiao Y, Ding Y, Ghosh J, Peng Y.  2024.  A natural language processing approach to detect inconsistencies in death investigation notes attributing suicide circumstances.. Commun Med (Lond). 4(1):199.

Liu H, Soroush A, Nestor JG, Park E, Idnay B, Fang Y, Pan J, Liao S, Bernard M, Peng Y et al..  2024.  Retrieval augmented scientific claim verification.. JAMIA Open. 7(1):ooae021.

Zhang G, Zhou Y, Hu Y, Xu H, Weng C, Peng Y.  2024.  A span-based model for extracting overlapping PICO entities from randomized controlled trial publications.. J Am Med Inform Assoc. 31(5):1163-1171.

Lovitt M, Ma H, Wang S, Peng Y.  2024.  Suicide Risk Assessment on Social Media with Semi-Supervised Learning.. Proc IEEE Int Conf Big Data. 2024:8541-8549.

Yang Y, Lin M, Zhao H, Peng Y, Huang F, Lu Z.  2024.  A survey of recent methods for addressing AI fairness and bias in biomedicine.. J Biomed Inform. 154:104646.

Holste G, Zhou Y, Wang S, Jaiswal A, Lin M, Zhuge S, Yang Y, Kim D, Nguyen-Mau T-H, Tran M-T et al..  2024.  Towards long-tailed, multi-label disease classification from chest X-ray: Overview of the CXR-LT challenge.. Med Image Anal. 97:103224.

Oniani D, Hilsman J, Peng Y, Poropatich RK, Pamplin JC, Legault GL, Wang Y.  2023.  Adopting and expanding ethical principles for generative artificial intelligence from military to healthcare.. NPJ Digit Med. 6(1):225.

Peng Y, Rousseau JF, Shortliffe EH, Weng C.  2023.  AI-generated text may have a role in evidence-based medicine.. Nat Med.

Jaiswal A, Chen T, Rousseau JF, Peng Y, Ding Y, Wang Z.  2023.  Attend Who is Weak: Pruning-assisted Medical Image Localization under Sophisticated and Implicit Imbalances.. IEEE Winter Conf Appl Comput Vis. 2023:4976-4985.

Patra BGopal, Sun Z, Cheng Z, Kumar PKasi Reddy, Altammami A, Liu Y, Joly R, Jedlicka C, Delgado D, Pathak J et al..  2023.  Automated classification of lay health articles using natural language processing: a case study on pregnancy health and postpartum depression.. Front Psychiatry. 14:1258887.

Xu J, Wang F, Zang C, Zhang H, Niotis K, Liberman AL, Stonnington CM, Ishii M, Adekkanattu P, Luo Y et al..  2023.  Comparing the effects of four common drug classes on the progression of mild cognitive impairment to dementia using electronic health records.. Sci Rep. 13(1):8102.

Deng Y, Liu L, Jiang H, Peng Y, Wei Y, Zhou Z, Zhong Y, Zhao Y, Yang X, Yu J et al..  2023.  Comparison of State-of-the-Art Neural Network Survival Models with the Pooled Cohort Equations for Cardiovascular Disease Risk Prediction.. BMC Med Res Methodol. 23(1):22.

Tong J, Luo C, Sun Y, Duan R, Saine E, Lin L, Peng Y, Lu Y, Batra A, Pan A et al..  2023.  Confidence Score: A Data-Driven Measure for Inclusive Systematic Reviews Considering Unpublished Preprints.. J Am Med Inform Assoc.

Lin M, Hou B, Mishra S, Yao T, Huo Y, Yang Q, Wang F, Shih G, Peng Y.  2023.  Enhancing thoracic disease detection using chest X-rays from PubMed Central Open Access.. Comput Biol Med. 159:106962.

Lin M, Xiao Y, Hou B, Wanyan T, Sharma MManoj, Wang Z, Wang F, Van Tassel S, Peng Y.  2023.  Evaluate underdiagnosis and overdiagnosis bias of deep learning model on primary open-angle glaucoma diagnosis in under-served populations.. AMIA Jt Summits Transl Sci Proc. 2023:370-377.

Sun Z, Ong H, Kennedy P, Tang L, Chen S, Elias J, Lucas E, Shih G, Peng Y.  2023.  Evaluating GPT4 on Impressions Generation in Radiology Reports.. Radiology. 307(5):e231259.

Tang L, Sun Z, Idnay B, Nestor JG, Soroush A, Elias PA, Xu Z, Ding Y, Durrett G, Rousseau JF et al..  2023.  Evaluating large language models on medical evidence summarization.. NPJ Digit Med. 6(1):158.

Kang T, Sun Y, Kim JHyun, Ta C, Perotte A, Schiffer K, Wu M, Zhao Y, Moustafa-Fahmy N, Peng Y et al..  2023.  EvidenceMap: a three-level knowledge representation for medical evidence computation and comprehension.. J Am Med Inform Assoc.

Holste G, Jiang Z, Jaiswal A, Hanna M, Minkowitz S, Legasto AC, Escalon JG, Steinberger S, Bittman M, Shen TC et al..  2023.  How Does Pruning Impact Long-Tailed Multi-label Medical Image Classifiers? Med Image Comput Comput Assist Interv. 14224:663-673.

Liu H, Peng Y, Weng C.  2023.  How Good Is ChatGPT for Medication Evidence Synthesis? Stud Health Technol Inform. 302:1062-1066.

Armstrong M, Benda NC, Seier K, Rogers C, Ancker J, Stetson PD, Peng Y, Diamond L.  2023.  Improving Cancer Care Communication: Identifying Sociodemographic Differences in Patient Portal Secure Messages Not Authored by the Patient.. Appl Clin Inform.

Lin M, Li T, Yang Y, Holste G, Ding Y, Van Tassel SH, Kovacs K, Shih G, Wang Z, Lu Z et al..  2023.  Improving model fairness in image-based computer-aided diagnosis.. Nat Commun. 14(1):6261.

Tang L, Peng Y, Wang Y, Ding Y, Durrett G, Rousseau JF.  2023.  Less Likely Brainstorming: Using Language Models to Generate Alternative Hypotheses.. Proc Conf Assoc Comput Linguist Meet. 2023:12532-12555.