Skip to main content
Enter the terms you wish to search for.
Select Search Option
This Site
All WCM Sites
Directory
Menu
Weill Cornell Medicine
Care
Discover
Teach
Peng Lab
Explore this Website
Home
Research
Toggle Research menu options
Projects
Lab Team
Publications
News
Resources
Contact Us
Weill Cornell Medicine
Care
Discover
Teach
Home
Research
Lab Team
Publications
News
Resources
Contact Us
Home
Publications
Publications
Found 92 results
Author
Title
Type
Year
2017
Peng Y
,
Lu Z
. 2017.
Deep learning for extracting protein-protein interactions from biomedical literature
.
BioNLP 2017. :29–38.
2016
Wei C-H
,
Peng Y
,
Leaman R
,
Davis APeter
,
Mattingly CJ
,
Li J
,
Wiegers TC
,
Lu Z
. 2016.
Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task
.
Database (Oxford). 2016
Peng Y
,
Arighi C
,
Wu CH
,
Vijay-Shanker K
. 2016.
BioC-compatible full-text passage detection for protein-protein interactions using extended dependency graph
.
Database (Oxford). 2016
Kim S
,
Doğan RIslamaj
,
Chatr-Aryamontri A
,
Chang CS
,
Oughtred R
,
Rust J
,
Batista-Navarro R
,
Carter J
,
Ananiadou S
,
Matos S
et al.
. 2016.
BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID
.
Database (Oxford). 2016
Peng Y
,
Wei C-H
,
Lu Z
. 2016.
Improving chemical disease relation extraction with rich features and weakly labeled data
.
J Cheminform. 8:53.
2015
Peng Y
,
Arighi C
,
Wu CH
,
.Vijay-Shanker K
. 2015.
Extended dependency graph for BioC-compatible protein-protein interaction (PPI) passage detection in full-text articles
.
Proceedings of the BioCreative V Workshop. :30-35.
Peng Y
,
Gupta S
,
Wu C
,
Shanker V
. 2015.
An extended dependency graph for relation extraction in biomedical texts
.
Proceedings of BioNLP 15. :21–30.
Li G
,
Ross KE
,
Arighi CN
,
Peng Y
,
Wu CH
,
Vijay-Shanker K
. 2015.
miRTex: A Text Mining System for miRNA-Gene Relation Extraction
.
PLoS Comput Biol. 11(9):e1004391.
Wei C-H
,
Peng Y
,
Leaman R
,
Davis APeter
,
Mattingly CJ
,
Li J
,
Wiegers TC
,
Lu Z
. 2015.
Overview of the Biocreative V chemical disease relation (CDR) task
.
Proceedings of the BioCreative V Workshop. :154-166.
2014
Comeau DC
,
Batista-Navarro RTheresa
,
Dai H-J
,
Doğan RIslamaj
,
Yepes AJimeno
,
Khare R
,
Lu Z
,
Marques H
,
Mattingly CJ
,
Neves M
et al.
. 2014.
BioC interoperability track overview
.
Database (Oxford). 2014
Peng Y
,
Torii M
,
Wu CH
,
Vijay-Shanker K
. 2014.
A generalizable NLP framework for fast development of pattern-based biomedical relation extraction systems
.
BMC Bioinformatics. 15:285.
Peng Y
,
Tudor CO
,
Torii M
,
Wu CH
,
Vijay-Shanker K
. 2014.
iSimp in BioC standard format: enhancing the interoperability of a sentence simplification system
.
Database (Oxford). 2014
2013
Comeau DC
,
Doğan RIslamaj
,
Ciccarese P
,
Cohen KBretonnel
,
Krallinger M
,
Leitner F
,
Lu Z
,
Peng Y
,
Rinaldi F
,
Torii M
et al.
. 2013.
BioC: a minimalist approach to interoperability for biomedical text processing
.
Database (Oxford). 2013:bat064.
Peng Y
,
Tudor CO
,
Torii M
,
Wu CH
,
Vijay-Shanker K
. 2013.
Enhancing the interoperability of iSimp by using the BioC format
.
Proceedings of the BioCreative IV Workshop. :5-9.
2012
Peng Y
,
Tudor CO
,
Torii M
,
Wu CH
,
Vijay-Shanker K.
. 2012.
iSimp: A sentence simplification system for biomedicail text
.
IEEE International Conference on Bioinformatics and Biomedicine. :211-216.
0
Yan K
,
Peng Y
,
Sandfort V
,
Bagheri M
,
Lu Z
,
Summers RM
. 0.
Holistic and Comprehensive Annotation of Clinically Significant Findings on Diverse CT Images: Learning From Radiology Reports and Label Ontology
.
IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR). :8523-8532.
Johnson AEW
,
Pollard TJ
,
Greenbaum NR
,
Lungren MP
,
Deng C-ying
,
Peng Y
,
Lu Z
,
Mark RG
,
Berkowitz SJ
,
Horng S
. 0.
MIMIC-CXR-JPG, a large publicly available database of labeled chest radiographs
.
« first
‹ previous
1
2
3
4
(current)