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Weill Cornell Medicine
Care
Discover
Teach
Home
Research
Lab Team
Publications
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Contact Us
Home
Publications
Publications
Found 104 results
Author
Title
Type
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J
Jaiswal A
,
Chen T
,
Rousseau JF
,
Peng Y
,
Ding Y
,
Wang Z
. 2023.
Attend Who is Weak: Pruning-assisted Medical Image Localization under Sophisticated and Implicit Imbalances.
.
IEEE Winter Conf Appl Comput Vis. 2023:4976-4985.
Jaiswal A
,
Li T
,
Zander C
,
Han Y
,
Rousseau JF
,
Peng Y
,
Ding Y
. 2021.
SCALP - Supervised Contrastive Learning for Cardiopulmonary Disease Classification and Localization in Chest X-rays using Patient Metadata
.
The IEEE International Conference on Data Mining (ICDM).
Jaiswal A
,
Tang L
,
Ghosh M
,
Rousseau J
,
Peng Y
,
Ding Y
. 2021.
RadBERT-CL: Factually-Aware Contrastive Learning for Radiology Report Classification
.
Machine Learning for Health (ML4H). :196-208.
I
Islamaj R
,
Leaman R
,
Kim S
,
Kwon D
,
Wei C-H
,
Comeau DC
,
Peng Y
,
Cissel D
,
Coss C
,
Fisher C
et al.
. 2021.
NLM-Chem, a new resource for chemical entity recognition in PubMed full text literature.
.
Sci Data. 8(1):91.
H
Holste G
,
Wang S
,
Jiang Z
,
Shen TC
,
Shih G
,
Summers RM
,
Peng Y
,
Wang Z
. 2022.
Long-Tailed Classification of Thorax Diseases on Chest X-Ray: A New Benchmark Study.
.
Data Augment Label Imperfections (2022). 13567:22-32.
Holste G
,
Jiang Z
,
Jaiswal A
,
Hanna M
,
Minkowitz S
,
Legasto AC
,
Escalon JG
,
Steinberger S
,
Bittman M
,
Shen TC
et al.
. 2023.
How Does Pruning Impact Long-Tailed Multi-label Medical Image Classifiers?
Med Image Comput Comput Assist Interv. 14224:663-673.
He X
,
Zhang R
,
Alpert J
,
Zhou S
,
Adam TJ
,
Raisa A
,
Peng Y
,
Zhang H
,
Guo Y
,
Bian J
. 2021.
When text simplification is not enough: could a graph-based visualization facilitate consumers' comprehension of dietary supplement information?
JAMIA Open. 4(1):ooab026.
Han Y
,
Chen C
,
Tewfik A
,
Glicksberg B
,
Ding Y
,
Peng Y
,
Wang Z
. 2022.
Knowledge-Augmented Contrastive Learning for Abnormality Classification and Localization in Chest X-rays with Radiomics using a Feedback Loop.
.
IEEE Winter Conf Appl Comput Vis. 2022:1789-1798.
Han Y
,
Holste G
,
Ding Y
,
Tewfik A
,
Peng Y
,
Wang Z
. 2022.
Radiomics-Guided Global-Local Transformer for Weakly Supervised Pathology Localization in Chest X-Rays.
.
IEEE Trans Med Imaging. PP
Han Y
,
Chen C
,
Tewfik AH
,
Ding Y
,
Peng Y
. 2021.
Pneumonia Detection on Chest X-ray using Radiomic Features and Contrastive Learning
.
IEEE International Symposium on Biomedical Imaging (ISBI).
Han Y
,
Chen C
,
Tang L
,
Lin M
,
Jaiswal A
,
Wang S
,
Tewfik A
,
Shih G
,
Ding Y
,
Peng Y
. 2021.
Using Radiomics as Prior Knowledge for Thorax Disease Classification and Localization in Chest X-rays.
.
AMIA Annu Symp Proc. 2021:546-555.
Han Z
,
Shen M
,
Liu H
,
Peng Y
. 2022.
Topical and emotional expressions regarding extreme weather disasters on social media: a comparison of posts from official media and the public.
.
Humanit Soc Sci Commun. 9(1):421.
G
Ghahramani G
,
Brendel M
,
Lin M
,
Chen Q
,
Keenan T
,
Chen K
,
Chew E
,
Lu Z
,
Peng Y
,
Wang F
. 2021.
Multi-task deep learning-based survival analysis on the prognosis of late AMD using the longitudinal data in AREDS.
.
AMIA Annu Symp Proc. 2021:506-515.
Ghahramani GC
,
Brendel M
,
Chen Q
,
Keenan TD
,
Chen K
,
Chew EY
,
Lu Z
,
Peng Y
,
Wang F
. 2021.
Deep learning survival analysis on the progression to late AMD in the Age-Related Eye Disease Study
.
Investigative Ophthalmology & Visual Science.
D
Du J
,
Chen Q
,
Peng Y
,
Xiang Y
,
Tao C
,
Lu Z
. 2019.
ML-Net: multi-label classification of biomedical texts with deep neural networks
.
J Am Med Inform Assoc. 26(11):1279-1285.
Doğan RIslamaj
,
Chatr-aryamontri A
,
Kim S
,
Wei C-H
,
Peng Y
,
Comeau D
,
Lu Z
. 2017.
BioCreative VI Precision Medicine Track: creating a training corpus for mining protein-protein interactions affected by mutations
.
BioNLP 2017. :171–175.
Deng Y
,
Liu L
,
Jiang H
,
Peng Y
,
Wei Y
,
Zhou Z
,
Zhong Y
,
Zhao Y
,
Yang X
,
Yu J
et al.
. 2023.
Comparison of State-of-the-Art Neural Network Survival Models with the Pooled Cohort Equations for Cardiovascular Disease Risk Prediction.
.
BMC Med Res Methodol. 23(1):22.
C
Comeau DC
,
Doğan RIslamaj
,
Ciccarese P
,
Cohen KBretonnel
,
Krallinger M
,
Leitner F
,
Lu Z
,
Peng Y
,
Rinaldi F
,
Torii M
et al.
. 2013.
BioC: a minimalist approach to interoperability for biomedical text processing
.
Database (Oxford). 2013:bat064.
Comeau DC
,
Batista-Navarro RTheresa
,
Dai H-J
,
Doğan RIslamaj
,
Yepes AJimeno
,
Khare R
,
Lu Z
,
Marques H
,
Mattingly CJ
,
Neves M
et al.
. 2014.
BioC interoperability track overview
.
Database (Oxford). 2014
Ching T
,
Himmelstein DS
,
Beaulieu-Jones BK
,
Kalinin AA
,
Do BT
,
Way GP
,
Ferrero E
,
Agapow P-M
,
Zietz M
,
Hoffman MM
et al.
. 2018.
Opportunities and obstacles for deep learning in biology and medicine
.
J R Soc Interface. 15(141)
Chen Q
,
Peng Y
,
Keenan T
,
Dharssi S
,
N EAgro
,
Wong WT
,
Chew EY
,
Lu Z
. 2019.
A multi-task deep learning model for the classification of Age-related Macular Degeneration
.
AMIA Jt Summits Transl Sci Proc. 2019:505-514.
Chen Q
,
Peng Y
,
Lu Z
. 2019.
BioSentVec: creating sentence embeddings for biomedical texts
.
IEEE International Conference on Healthcare Informatics (ICHI).
Chen Q
,
Keenan TDL
,
Allot A
,
Peng Y
,
Agrón E
,
Domalpally A
,
Klaver CCW
,
Luttikhuizen DT
,
Colyer MH
,
Cukras CA
et al.
. 2021.
Multimodal, multitask, multiattention (M3) deep learning detection of reticular pseudodrusen: Toward automated and accessible classification of age-related macular degeneration.
.
J Am Med Inform Assoc.
Chen Q
,
Rankine A
,
Peng Y
,
Aghaarabi E
,
Lu Z
. 2021.
Benchmarking Effectiveness and Efficiency of Deep Learning Models for Semantic Textual Similarity in the Clinical Domain: Validation Study.
.
JMIR Med Inform. 9(12):e27386.
B
Brandt PS
,
Pacheco JA
,
Adekkanattu P
,
Sholle ET
,
Abedian S
,
Stone DJ
,
Knaack DM
,
Xu J
,
Xu Z
,
Peng Y
et al.
. 2022.
Design and validation of a FHIR-based EHR-driven phenotyping toolbox.
.
J Am Med Inform Assoc. 29(9):1449-1460.
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