BioC interoperability track overview

TitleBioC interoperability track overview
Publication TypeJournal Article
Year of Publication2014
AuthorsComeau DC, Batista-Navarro RTheresa, Dai H-J, Doğan RIslamaj, Yepes AJimeno, Khare R, Lu Z, Marques H, Mattingly CJ, Neves M, Peng Y, Rak R, Rinaldi F, Tsai RTzong-Han, Verspoor K, Wiegers TC, Wu CH, W Wilbur J
JournalDatabase (Oxford)
Volume2014
Date Published2014
ISSN1758-0463
KeywordsBiomedical Research, Computational Biology, Data Mining, Database Management Systems, Databases, Factual, Internet, Natural Language Processing, Software
Abstract

BioC is a new simple XML format for sharing biomedical text and annotations and libraries to read and write that format. This promotes the development of interoperable tools for natural language processing (NLP) of biomedical text. The interoperability track at the BioCreative IV workshop featured contributions using or highlighting the BioC format. These contributions included additional implementations of BioC, many new corpora in the format, biomedical NLP tools consuming and producing the format and online services using the format. The ease of use, broad support and rapidly growing number of tools demonstrate the need for and value of the BioC format. Database URL: http://bioc.sourceforge.net/.

DOI10.1093/database/bau053
Alternate JournalDatabase (Oxford)
PubMed ID24980129
PubMed Central IDPMC4074764
Grant ListR01 ES014065 / ES / NIEHS NIH HHS / United States
/ / Intramural NIH HHS / United States