Publications

Song Y, Zhan Z, Xie F, Wang N, Peng Y, Zhang R, Lin M.  2026.  A cancer-type-aware framework for robust multimodal survival prediction under missing modalities.. Brief Bioinform. 27(2)

Song Y, Zhan Z, Xie F, Wang N, Peng Y, Zhang R, Lin M.  2026.  A cancer-type-aware framework for robust multimodal survival prediction under missing modalities.. Brief Bioinform. 27(2)

Deng R, Martin G, Wang T, Zhang G, Liu Y, Weng C, Wang Y, Rousseau JF, Peng Y.  2026.  CPGPrompt: translating clinical guidelines into large language model-executable decision support.. J Am Med Inform Assoc.

Fang Y, Zhang G, Chen F, Peng Y, Weng C.  2026.  A critical evaluation of generative query expansion on biomedical literature retrieval.. J Am Med Inform Assoc. 33(6):1121-1133.

Zhou Z, Deng Y, Liu L, Jiang H, Peng Y, Yang X, Zhao Y, Ning H, Allen NB, Wilkins JT et al..  2026.  Deep Neural Network With a Smooth Monotonic Output Layer for Dynamic Risk Prediction.. Stat Med. 45(3-5):e70401.

Zhou Z, Deng Y, Liu L, Jiang H, Peng Y, Yang X, Zhao Y, Ning H, Allen NB, Wilkins JT et al..  2026.  Deep Neural Network With a Smooth Monotonic Output Layer for Dynamic Risk Prediction.. Stat Med. 45(3-5):e70401.

Zhou Z, Deng Y, Liu L, Jiang H, Peng Y, Yang X, Zhao Y, Ning H, Allen NB, Wilkins JT et al..  2026.  Deep Neural Network With a Smooth Monotonic Output Layer for Dynamic Risk Prediction.. Stat Med. 45(3-5):e70401.

Xu Z, Lin M, Zhou Y, Xu Z, Orlow SJ, Meehan SA, Flamm A, Moshiri AS, Peng Y.  2026.  Establishing dermatopathology encyclopedia DermpathNet with Artificial Intelligence-Based Workflow.. Sci Data. 13(1)

Zhang G, Fang Y, Chen F, Ta C, Hripcsak G, Ryan P, Peng Y, Weng C.  2026.  A neural-symbolic AI agent system for biomedical concept mapping.. NPJ Digit Med. 9(1)

Dong H, Lin Y, Zhou P, Feng XZhong, Legasto AClint, Lin M, Chen H, Yang Y, Shih G, Peng Y.  2026.  OVERVIEW OF THE CXR-LT 2026 CHALLENGE: MULTI-CENTER LONG-TAILED AND ZERO SHOT CHEST X-RAY CLASSIFICATION.. Proc IEEE Int Symp Biomed Imaging. 2026

He S, Nie Y, Wang H, Yang S, Wang Y, Cai Z, Chen Z, Xu Y, Wu L, Cheng NShing et al..  2026.  Towards generalizable AI in medicine via Generalist-Specialist Collaboration.. Nat Biomed Eng.

He S, Nie Y, Wang H, Yang S, Wang Y, Cai Z, Chen Z, Xu Y, Wu L, Cheng NShing et al..  2026.  Towards generalizable AI in medicine via Generalist-Specialist Collaboration.. Nat Biomed Eng.

Song Y, Zhang Y, Orengo-Nania S, Wang N, Ma F, Zhang R, Peng Y, Lin M.  2026.  Two-Stage Decoupling Framework for Variable-Length Glaucoma Prognosis.. Learn Longitud Med Images Data (2025). 16184:91-101.

Song Y, Zhang Y, Orengo-Nania S, Wang N, Ma F, Zhang R, Peng Y, Lin M.  2026.  Two-Stage Decoupling Framework for Variable-Length Glaucoma Prognosis.. Learn Longitud Med Images Data (2025). 16184:91-101.

Fang Y, Zhang G, Chen F, Hripcsak G, Peng Y, Ryan P, Weng C.  2025.  CLEAR: A vision to support clinical evidence lifecycle with continuous learning.. J Biomed Inform. 169:104884.

Lin M, Holste G, Wang S, Zhou Y, Wei Y, Banerjee I, Chen P, Dai T, Du Y, Dvornek NC et al..  2025.  CXR-LT 2024: A MICCAI challenge on long-tailed, multi-label, and zero-shot disease classification from chest X-ray.. Med Image Anal. 106:103739.

Lin M, Holste G, Wang S, Zhou Y, Wei Y, Banerjee I, Chen P, Dai T, Du Y, Dvornek NC et al..  2025.  CXR-LT 2024: A MICCAI challenge on long-tailed, multi-label, and zero-shot disease classification from chest X-ray.. Med Image Anal. 106:103739.

Lin M, Holste G, Wang S, Zhou Y, Wei Y, Banerjee I, Chen P, Dai T, Du Y, Dvornek NC et al..  2025.  CXR-LT 2024: A MICCAI challenge on long-tailed, multi-label, and zero-shot disease classification from chest X-ray.. Med Image Anal. 106:103739.

Cheng S, Wei Y, Zhou Y, Xu Z, Wright DN, Liu J, Peng Y.  2025.  Deciphering genomic codes using advanced natural language processing techniques: a scoping review.. J Am Med Inform Assoc.

Morris JX, Campion TR, Nutheti SLaasya, Peng Y, Raj A, Zabih R, Cole CL.  2025.  DIRI: Adversarial Patient Reidentification with Large Language Models for Evaluating Clinical Text Anonymization.. AMIA Jt Summits Transl Sci Proc. 2025:355-364.

Lin M, Wang S, Ding Y, Zhao L, Wang F, Peng Y.  2025.  An empirical study of using radiology reports and images to improve intensive care unit mortality prediction.. JAMIA Open. 8(1):ooae137.

Wei Y, Wang X, Ong H, Zhou Y, Flanders A, Shih G, Peng Y.  2025.  Enhancing Disease Detection in Radiology Reports Through Fine-tuning Lightweight LLM on Weak Labels.. AMIA Jt Summits Transl Sci Proc. 2025:614-623.

Idnay B, Xu Z, Adams WG, Adibuzzaman M, Anderson NR, Bahroos N, Bell DS, Bumgardner C, Campion T, Castro M et al..  2025.  Environment scan of generative AI infrastructure for clinical and translational science.. Npj Health Syst. 2(1):4.

Idnay B, Xu Z, Adams WG, Adibuzzaman M, Anderson NR, Bahroos N, Bell DS, Bumgardner C, Campion T, Castro M et al..  2025.  Environment scan of generative AI infrastructure for clinical and translational science.. Npj Health Syst. 2(1):4.

Idnay B, Xu Z, Adams WG, Adibuzzaman M, Anderson NR, Bahroos N, Bell DS, Bumgardner C, Campion T, Castro M et al..  2025.  Environment scan of generative AI infrastructure for clinical and translational science.. Npj Health Syst. 2(1):4.