Publications

Zhang G, Zhou Y, Hu Y, Xu H, Weng C, Peng Y.  2024.  A span-based model for extracting overlapping PICO entities from randomized controlled trial publications.. J Am Med Inform Assoc. 31(5):1163-1171.

Lovitt M, Ma H, Wang S, Peng Y.  2024.  Suicide Risk Assessment on Social Media with Semi-Supervised Learning.. Proc IEEE Int Conf Big Data. 2024:8541-8549.

Wanyan T, Lin M, Klang E, Menon KM, Gulamali FF, Azad A, Zhang Y, Ding Y, Wang Z, Wang F et al..  2022.  Supervised Pretraining through Contrastive Categorical Positive Samplings to Improve COVID-19 Mortality Prediction.. ACM BCB. 2022

Yang Y, Lin M, Zhao H, Peng Y, Huang F, Lu Z.  2024.  A survey of recent methods for addressing AI fairness and bias in biomedicine.. J Biomed Inform. 154:104646.

Peng Y, Zhang Z, Wang X, Yang L, Lu L.  2019.  Text Mining and Deep Learning for Disease Classification. Handbook of Medical Image Computing and Computer Assisted Intervention. :109-136.

Wang X, Peng Y, Lu L, Lu Z, Summers RM.  2018.  TieNet: Text-Image Embedding Network for Common Thorax Disease Classification and Reporting in Chest X-Rays. IEEE/CVF Conference on Computer Vision and Pattern Recognition. :9049-9058.

Han Z, Shen M, Liu H, Peng Y.  2022.  Topical and emotional expressions regarding extreme weather disasters on social media: a comparison of posts from official media and the public.. Humanit Soc Sci Commun. 9(1):421.

Holste G, Zhou Y, Wang S, Jaiswal A, Lin M, Zhuge S, Yang Y, Kim D, Nguyen-Mau T-H, Tran M-T et al..  2024.  Towards long-tailed, multi-label disease classification from chest X-ray: Overview of the CXR-LT challenge.. Med Image Anal. 97:103224.

Peng Y, Yan S, Lu Z.  2019.  Transfer Learning in Biomedical Natural Language Processing: An Evaluation of BERT and ELMo on Ten Benchmarking Datasets. Proceedings of the 18th BioNLP Workshop and Shared Task. :58–65.

Wang S, Tang L, Majety A, Rousseau JF, Shih G, Ding Y, Peng Y.  2022.  Trustworthy assertion classification through prompting.. J Biomed Inform. 132:104139.

Han Y, Chen C, Tang L, Lin M, Jaiswal A, Wang S, Tewfik A, Shih G, Ding Y, Peng Y.  2021.  Using Radiomics as Prior Knowledge for Thorax Disease Classification and Localization in Chest X-rays.. AMIA Annu Symp Proc. 2021:546-555.

He X, Zhang R, Alpert J, Zhou S, Adam TJ, Raisa A, Peng Y, Zhang H, Guo Y, Bian J.  2021.  When text simplification is not enough: could a graph-based visualization facilitate consumers' comprehension of dietary supplement information? JAMIA Open. 4(1):ooab026.