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Weill Cornell Medicine
Care
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Teach
Home
Research
Lab Team
Publications
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Publications
Publications
Found 104 results
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C
Karabulut MEfruz
,
Vijay-Shanker K.
,
Peng Y
. 2021.
CU-UD: text-mining drug and chemical-proteininteractions with ensembles of BERT-based models
.
BioCreative VII. :45-48.
D
Keenan TDL
,
Chen Q
,
Peng Y
,
Domalpally A
,
Agrón E
,
Hwang CK
,
Thavikulwat ATherese
,
Lee DHana
,
Li D
,
Wong WT
et al.
. 2020.
Deep learning automated detection of reticular pseudodrusen from fundus autofluorescence images and color fundus photographs in the Age-Related Eye Disease Study 2 (AREDS2)
.
Investigative Ophthalmology & Visual Science. 61:1644.
Keenan TDL
,
Chen Q
,
Peng Y
,
Domalpally A
,
Agrón E
,
Hwang CK
,
Thavikulwat AT
,
Lee DH
,
Li D
,
Wong WT
et al.
. 2020.
Deep Learning Automated Detection of Reticular Pseudodrusen from Fundus Autofluorescence Images or Color Fundus Photographs in AREDS2
.
Ophthalmology.
Peng Y
,
Lu Z
. 2017.
Deep learning for extracting protein-protein interactions from biomedical literature
.
BioNLP 2017. :29–38.
Ghahramani GC
,
Brendel M
,
Chen Q
,
Keenan TD
,
Chen K
,
Chew EY
,
Lu Z
,
Peng Y
,
Wang F
. 2021.
Deep learning survival analysis on the progression to late AMD in the Age-Related Eye Disease Study
.
Investigative Ophthalmology & Visual Science.
Brandt PS
,
Pacheco JA
,
Adekkanattu P
,
Sholle ET
,
Abedian S
,
Stone DJ
,
Knaack DM
,
Xu J
,
Xu Z
,
Peng Y
et al.
. 2022.
Design and validation of a FHIR-based EHR-driven phenotyping toolbox.
.
J Am Med Inform Assoc. 29(9):1449-1460.
Mathai TSudharshan
,
Lee S
,
Elton DC
,
Shen TC
,
Peng Y
,
Lu Z
,
Summers RM
. 2021.
Detection of lymph nodes in T2 MRI using neural network ensembles
.
Learning in Medical Imaging (MLMI). :682-691.
E
Tang L
,
Kooragayalu S
,
Wang Y
,
Ding Y
,
Durrett G
,
Rousseau JF
,
Peng Y
. 2022.
EchoGen: A New Benchmark Study on Generating Conclusions from Echocardiogram Notes.
.
Proc Conf Assoc Comput Linguist Meet. 2022:359-368.
Peng Y
,
Chen Q
,
Lu Z
. 2020.
An Empirical Study of Multi-Task Learning on BERT for Biomedical Text Mining
.
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing.
Peng Y
,
Tudor CO
,
Torii M
,
Wu CH
,
Vijay-Shanker K
. 2013.
Enhancing the interoperability of iSimp by using the BioC format
.
Proceedings of the BioCreative IV Workshop. :5-9.
Lin M
,
Hou B
,
Mishra S
,
Yao T
,
Huo Y
,
Yang Q
,
Wang F
,
Shih G
,
Peng Y
. 2023.
Enhancing thoracic disease detection using chest X-rays from PubMed Central Open Access.
.
Comput Biol Med. 159:106962.
Lin M
,
Xiao Y
,
Hou B
,
Wanyan T
,
Sharma MManoj
,
Wang Z
,
Wang F
,
Van Tassel S
,
Peng Y
. 2023.
Evaluate underdiagnosis and overdiagnosis bias of deep learning model on primary open-angle glaucoma diagnosis in under-served populations.
.
AMIA Jt Summits Transl Sci Proc. 2023:370-377.
Sun Z
,
Ong H
,
Kennedy P
,
Tang L
,
Chen S
,
Elias J
,
Lucas E
,
Shih G
,
Peng Y
. 2023.
Evaluating GPT4 on Impressions Generation in Radiology Reports.
.
Radiology. 307(5):e231259.
Tang L
,
Sun Z
,
Idnay B
,
Nestor JG
,
Soroush A
,
Elias PA
,
Xu Z
,
Ding Y
,
Durrett G
,
Rousseau JF
et al.
. 2023.
Evaluating large language models on medical evidence summarization.
.
NPJ Digit Med. 6(1):158.
Kang T
,
Sun Y
,
Kim JHyun
,
Ta C
,
Perotte A
,
Schiffer K
,
Wu M
,
Zhao Y
,
Moustafa-Fahmy N
,
Peng Y
et al.
. 2023.
EvidenceMap: a three-level knowledge representation for medical evidence computation and comprehension.
.
J Am Med Inform Assoc.
Peng Y
,
Arighi C
,
Wu CH
,
.Vijay-Shanker K
. 2015.
Extended dependency graph for BioC-compatible protein-protein interaction (PPI) passage detection in full-text articles
.
Proceedings of the BioCreative V Workshop. :30-35.
Peng Y
,
Gupta S
,
Wu C
,
Shanker V
. 2015.
An extended dependency graph for relation extraction in biomedical texts
.
Proceedings of BioNLP 15. :21–30.
Peng Y
,
Rios A
,
Kavuluru R
,
Lu Z
. 2018.
Extracting chemical-protein relations with ensembles of SVM and deep learning models
.
Database (Oxford). 2018
F
Moukheiber D
,
Mahindre S
,
Moukheiber L
,
Moukheiber M
,
Wang S
,
Ma C
,
Shih G
,
Peng Y
,
Gao M
. 2022.
Few-Shot Learning Geometric Ensemble for Multi-label Classification of Chest X-Rays.
.
Data Augment Label Imperfections (2022). 13567:112-122.
Yan K
,
Peng Y
,
Lu Z
,
Summers RM
. 2019.
Fine-Grained Lesion Annotation in CT Images With Knowledge Mined From Radiology Reports
.
IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019). :285-288.
G
Peng Y
,
Torii M
,
Wu CH
,
Vijay-Shanker K
. 2014.
A generalizable NLP framework for fast development of pattern-based biomedical relation extraction systems
.
BMC Bioinformatics. 15:285.
Paul A
,
Shen TC
,
Lee S
,
Balachandar N
,
Peng Y
,
Lu Z
,
Summers RM
. 2021.
Generalized Zero-shot Chest X-ray Diagnosis through Trait-Guided Multi-view Semantic Embedding with Self-training.
.
IEEE Trans Med Imaging.
Wang S
,
Zhu Y
,
Lee S
,
Elton DC
,
Shen TC
,
Tang Y
,
Peng Y
,
Lu Z
,
Summers RM
. 2022.
Global-Local attention network with multi-task uncertainty loss for abnormal lymph node detection in MR images.
.
Med Image Anal. 77:102345.
H
Yan K
,
Peng Y
,
Sandfort V
,
Bagheri M
,
Lu Z
,
Summers RM
. 0.
Holistic and Comprehensive Annotation of Clinically Significant Findings on Diverse CT Images: Learning From Radiology Reports and Label Ontology
.
IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR). :8523-8532.
Holste G
,
Jiang Z
,
Jaiswal A
,
Hanna M
,
Minkowitz S
,
Legasto AC
,
Escalon JG
,
Steinberger S
,
Bittman M
,
Shen TC
et al.
. 2023.
How Does Pruning Impact Long-Tailed Multi-label Medical Image Classifiers?
Med Image Comput Comput Assist Interv. 14224:663-673.
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