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Weill Cornell Medicine
Care
Discover
Teach
Home
Research
Lab Team
Publications
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Resources
Contact Us
Home
Publications
Publications
Found 68 results
Author
Title
Type
Year
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Author
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Peng, Yifan
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2020
Tang Y-X
,
Tang Y-B
,
Peng Y
,
Yan K
,
Bagheri M
,
Redd BA
,
Brandon CJ
,
Lu Z
,
Han M
,
Xiao J
et al.
. 2020.
Automated abnormality classification of chest radiographs using deep convolutional neural networks
.
NPJ Digit Med. 3:70.
Keenan TDL
,
Chen Q
,
Peng Y
,
Domalpally A
,
Agrón E
,
Hwang CK
,
Thavikulwat AT
,
Lee DH
,
Li D
,
Wong WT
et al.
. 2020.
Deep Learning Automated Detection of Reticular Pseudodrusen from Fundus Autofluorescence Images or Color Fundus Photographs in AREDS2
.
Ophthalmology.
Peng Y
,
Keenan TD
,
Chen Q
,
Agrón E
,
Allot A
,
Wong WT
,
Chew EY
,
Lu Z
. 2020.
Predicting risk of late age-related macular degeneration using deep learning
.
NPJ Digit Med. 3:111.
2019
Du J
,
Chen Q
,
Peng Y
,
Xiang Y
,
Tao C
,
Lu Z
. 2019.
ML-Net: multi-label classification of biomedical texts with deep neural networks
.
J Am Med Inform Assoc. 26(11):1279-1285.
Chen Q
,
Peng Y
,
Keenan T
,
Dharssi S
,
N EAgro
,
Wong WT
,
Chew EY
,
Lu Z
. 2019.
A multi-task deep learning model for the classification of Age-related Macular Degeneration
.
AMIA Jt Summits Transl Sci Proc. 2019:505-514.
2018
Peng Y
,
Rios A
,
Kavuluru R
,
Lu Z
. 2018.
Extracting chemical-protein relations with ensembles of SVM and deep learning models
.
Database (Oxford). 2018
Allot A
,
Peng Y
,
Wei C-H
,
Lee K
,
Phan L
,
Lu Z
. 2018.
LitVar: a semantic search engine for linking genomic variant data in PubMed and PMC
.
Nucleic Acids Res. 46(W1):W530-W536.
Peng Y
,
Wang X
,
Lu L
,
Bagheri M
,
Summers R
,
Lu Z
. 2018.
NegBio: a high-performance tool for negation and uncertainty detection in radiology reports
.
AMIA Jt Summits Transl Sci Proc. 2017:188-196.
Ching T
,
Himmelstein DS
,
Beaulieu-Jones BK
,
Kalinin AA
,
Do BT
,
Way GP
,
Ferrero E
,
Agapow P-M
,
Zietz M
,
Hoffman MM
et al.
. 2018.
Opportunities and obstacles for deep learning in biology and medicine
.
J R Soc Interface. 15(141)
2016
Wei C-H
,
Peng Y
,
Leaman R
,
Davis APeter
,
Mattingly CJ
,
Li J
,
Wiegers TC
,
Lu Z
. 2016.
Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task
.
Database (Oxford). 2016
Peng Y
,
Arighi C
,
Wu CH
,
Vijay-Shanker K
. 2016.
BioC-compatible full-text passage detection for protein-protein interactions using extended dependency graph
.
Database (Oxford). 2016
Kim S
,
Doğan RIslamaj
,
Chatr-Aryamontri A
,
Chang CS
,
Oughtred R
,
Rust J
,
Batista-Navarro R
,
Carter J
,
Ananiadou S
,
Matos S
et al.
. 2016.
BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID
.
Database (Oxford). 2016
Peng Y
,
Wei C-H
,
Lu Z
. 2016.
Improving chemical disease relation extraction with rich features and weakly labeled data
.
J Cheminform. 8:53.
2015
Li G
,
Ross KE
,
Arighi CN
,
Peng Y
,
Wu CH
,
Vijay-Shanker K
. 2015.
miRTex: A Text Mining System for miRNA-Gene Relation Extraction
.
PLoS Comput Biol. 11(9):e1004391.
2014
Comeau DC
,
Batista-Navarro RTheresa
,
Dai H-J
,
Doğan RIslamaj
,
Yepes AJimeno
,
Khare R
,
Lu Z
,
Marques H
,
Mattingly CJ
,
Neves M
et al.
. 2014.
BioC interoperability track overview
.
Database (Oxford). 2014
Peng Y
,
Torii M
,
Wu CH
,
Vijay-Shanker K
. 2014.
A generalizable NLP framework for fast development of pattern-based biomedical relation extraction systems
.
BMC Bioinformatics. 15:285.
Peng Y
,
Tudor CO
,
Torii M
,
Wu CH
,
Vijay-Shanker K
. 2014.
iSimp in BioC standard format: enhancing the interoperability of a sentence simplification system
.
Database (Oxford). 2014
2013
Comeau DC
,
Doğan RIslamaj
,
Ciccarese P
,
Cohen KBretonnel
,
Krallinger M
,
Leitner F
,
Lu Z
,
Peng Y
,
Rinaldi F
,
Torii M
et al.
. 2013.
BioC: a minimalist approach to interoperability for biomedical text processing
.
Database (Oxford). 2013:bat064.
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